28 research outputs found
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Target Detection in SAR Images Based on a Level Set Approach
This paper introduces a new framework for point target detection in synthetic aperture radar (SAR) images. We focus on the task of locating reflective small regions using alevel set based algorithm. Unlike most of the approaches in image segmentation, we address an algorithm which incorporates speckle statistics instead of empirical parameters and also discards speckle filtering. The curve evolves according to speckle statistics, initially propagating with a maximum upward velocity in homogeneous areas. Our approach is validated by a series of tests on synthetic and real SAR images and compared with three other segmentation algorithms, demonstrating that it configures a novel and efficient method for target detection purpose
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Saliency-driven system models for cell analysis with deep learning.
Background and objectivesSaliency refers to the visual perception quality that makes objects in a scene to stand out from others and attract attention. While computational saliency models can simulate the expert's visual attention, there is little evidence about how these models perform when used to predict the cytopathologist's eye fixations. Saliency models may be the key to instrumenting fast object detection on large Pap smear slides under real noisy conditions, artifacts, and cell occlusions. This paper describes how our computational schemes retrieve regions of interest (ROI) of clinical relevance using visual attention models. We also compare the performance of different computed saliency models as part of cell screening tasks, aiming to design a computer-aided diagnosis systems that supports cytopathologists.MethodWe record eye fixation maps from cytopathologists at work, and compare with 13 different saliency prediction algorithms, including deep learning. We develop cell-specific convolutional neural networks (CNN) to investigate the impact of bottom-up and top-down factors on saliency prediction from real routine exams. By combining the eye tracking data from pathologists with computed saliency models, we assess algorithms reliability in identifying clinically relevant cells.ResultsThe proposed cell-specific CNN model outperforms all other saliency prediction methods, particularly regarding the number of false positives. Our algorithm also detects the most clinically relevant cells, which are among the three top salient regions, with accuracy above 98% for all diseases, except carcinoma (87%). Bottom-up methods performed satisfactorily, with saliency maps that enabled ROI detection above 75% for carcinoma and 86% for other pathologies.ConclusionsROIs extraction using our saliency prediction methods enabled ranking the most relevant clinical areas within the image, a viable data reduction strategy to guide automatic analyses of Pap smear slides. Top-down factors for saliency prediction on cell images increases the accuracy of the estimated maps while bottom-up algorithms proved to be useful for predicting the cytopathologist's eye fixations depending on parameters, such as the number of false positive and negative. Our contributions are: comparison among 13 state-of-the-art saliency models to cytopathologists' visual attention and deliver a method that the associate the most conspicuous regions to clinically relevant cells
Target detection in SAR images based on a level set approach
Abstract This paper introduces a new framework for target detection in SAR images. We focus on the task of locating heterogeneous regions using a level set based algorithm. Unlike most of the approaches in image segmentation, we address an algorithm which incorporates speckle statistics instead of empirical parameters and discards speckle filtering. The curve evolves according to speckle statistics, initially propagating with a maximum upward velocity in homogeneous areas. Our approach is validated by a series of tests on synthetic and real SAR images demonstrating that it represents a novel and efficient method for target detection purpose
Synchrotron Microtomography and Neutron Radiography Characterization of the Microstruture and Water Absorption of Concrete from Pompeii
There is renewed interest in using advanced techniques to characterize
ancient Roman concrete. In the present work, samples were drilled from the
"Hospitium" in Pompeii and were analyzed by synchrotron microtomography (uCT)
and neutron radiography to study how the microstructure, including the presence
of induced cracks, affects their water adsorption. The water distribution and
absorptivity were quantified by neutron radiography. The 3D crack propagation,
pore size distribution and orientation, tortuosity, and connectivity were
analyzed from uCT results using advanced imaging methods. The concrete
characterization also included classical methods (e.g., differential
thermal-thermogravimetric, X-ray diffractometry, and scanning electron
microscopy). Ductile fracture patterns were observed once cracks were
introduced. When compared to Portland cement mortar/concrete, Pompeii samples
had relatively high porosity, low connectivity, and similar coefficient of
capillary penetration. In addition, the permeability was predicted from models
based on percolation theory and the pore structure data to evaluate the fluid
transport properties
Wavelet Analysis for Wind Fields Estimation
Wind field analysis from synthetic aperture radar images allows the estimation of wind direction and speed based on image descriptors. In this paper, we propose a framework to automate wind direction retrieval based on wavelet decomposition associated with spectral processing. We extend existing undecimated wavelet transform approaches, by including Ă trous with B3 spline scaling function, in addition to other wavelet bases as Gabor and Mexican-hat. The purpose is to extract more reliable directional information, when wind speed values range from 5 to 10 msâ1. Using C-band empirical models, associated with the estimated directional information, we calculate local wind speed values and compare our results with QuikSCAT scatterometer data. The proposed approach has potential application in the evaluation of oil spills and wind farms
Automated analysis for detecting beams in laser wakefield simulations
Laser wakefield particle accelerators have shown the potential to generate electric fields thousands of times higher than those of conventional accelerators. The resulting extremely short particle acceleration distance could yield a potential new compact source of energetic electrons and radiation, with wide applications from medicine to physics. Physicists investigate laser-plasma internal dynamics by running particle-in-cell simulations; however, this generates a large dataset that requires time-consuming, manual inspection by experts in order to detect key features such as beam formation. This paper describes a framework to automate the data analysis and classification of simulation data. First, we propose a new method to identify locations with high density of particles in the space-time domain, based on maximum extremum point detection on the particle distribution. We analyze high density electron regions using a lifetime diagram by organizing and pruning the maximum extrema as nodes in a minimum spanning tree. Second, we partition the multivariate data using fuzzy clustering to detect time steps in a experiment that may contain a high quality electron beam. Finally, we combine results from fuzzy clustering and bunch lifetime analysis to estimate spatially confined beams. We demonstrate our algorithms successfully on four different simulation datasets
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Segmentation of subcellular compartments combining superpixel representation with Voronoi diagrams
A reusable neural network pipeline for unidirectional fiber segmentation.
Fiber-reinforced ceramic-matrix composites are advanced, temperature resistant materials with applications in aerospace engineering. Their analysis involves the detection and separation of fibers, embedded in a fiber bed, from an imaged sample. Currently, this is mostly done using semi-supervised techniques. Here, we present an open, automated computational pipeline to detect fibers from a tomographically reconstructed X-ray volume. We apply our pipeline to a non-trivial dataset by Larson et al. To separate the fibers in these samples, we tested four different architectures of convolutional neural networks. When comparing our neural network approach to a semi-supervised one, we obtained Dice and Matthews coefficients reaching up to 98%, showing that these automated approaches can match human-supervised methods, in some cases separating fibers that human-curated algorithms could not find. The software written for this project is open source, released under a permissive license, and can be freely adapted and re-used in other domains